Lossless FASTQ Compression

Store FASTQ files at 50% less than S3

5x smaller than gzip. 100% lossless. Bit-identical decompression. Upload via API or browser.

We'll compress a sample of your data and send the results. No credit card required.

50%
Less than AWS
50%
Less than Google
50%
Less than Azure
100%
Lossless

Benchmarked on real sequencing data

DDBJ Sequence Read Archive datasets. Decompressed output is bit-identical to the original.

Raw FASTQ
100%
gzip
~25%
PetaGene
~5.3%
4BIN
50% less
Dataset 4BIN PetaGene gzip Result
DRR000798 4.56% ~5.3% ~25% 1.16x better than PetaGene
DRR000801 4.77% ~5.3% ~25% 1.11x better than PetaGene
DRR000802 4.47% ~5.3% ~25% 1.19x better than PetaGene

How it works

1

Upload FASTQ

Drag your .fastq or .fastq.gz file into the browser, or use the API / CLI.

2

We compress it

Our 4BIN encoder stores your data at 50% less than AWS, Google, and Azure. Lossless. Takes seconds.

3

Download or store

Download the original file and save 50% data storage costs.

Get Free Compression Report

Compatible with your pipeline

verified

Bit-perfect lossless

Every base call, quality score, and read header decompresses to the exact original. SHA-256 verified.

code

REST API + CLI

Integrate with curl, Python, or any HTTP client. Scriptable for batch pipelines.

biotech

FASTQ, BAM, VCF, POD5

Supports all major sequencing formats. Paired reads, Illumina, ONT, PacBio data.

security

HIPAA compatible

Data encrypted in transit and at rest. SOC 2 Type II aligned security practices.

Start in 30 seconds

Upload via API
curl -X POST https://smallest.zip/api/dna/upload \
  -H "x-api-key: YOUR_API_KEY" \
  -F "file=@sample.fastq" \
  -F "format=fastq"
Download decompressed
curl https://smallest.zip/api/files/UPLOAD_ID/download \
  -H "x-api-key: YOUR_API_KEY" \
  -o restored.fastq
View API Docs Get Free Compression Report

How much would you save?

Annual S3 storage costs at $0.023/GB/month — raw FASTQ vs 4BIN compressed.

Raw Data Before (gzip) After (4BIN) Annual Savings
10 TB $690/yr $124/yr $566/yr
100 TB $6,900/yr $1,242/yr $5,658/yr
1 PB $69,000/yr $12,420/yr $56,580/yr
10 PB $690,000/yr $124,200/yr $565,800/yr

Before column assumes gzip (~25% of raw). 4BIN stores at 50% less than AWS, Google, and Azure.

See how much your lab would save

Send us a sample FASTQ file and we'll send back a free compression report showing your exact savings vs gzip, S3, and Glacier.

No credit card. No commitment. Just data.